2024-10-31

SageMath 10.4

Compiling successfully on RHEL9.

 cd /opt/sagemath    # made writable to this user 
 wget https://mirror.dogado.de/sage/src/sage-10.4.tar.gz
 tar -xzf sage-10.4.tar.gz
 cd sage-10.4
 ./configure 
 make -j4
 cd ../bin
 ln -s ../sagemath/sage-10.4/sage sage 


Note that this was after the package-installation listed below (dnf install ...). 




Older notes follow, about an attempted "greedy compilation" to get more options, locally provided. 


# with SageMath 10.4:
#  I tried configure/make with asking for all options and for not using the "system" versions of packages (so, bigger compilation work and installed size, but hoped to be more capable and portable [copyable to other fairly similar systems]); had to renege to saying to use RHEL9 system gfortran as there was a compilation error with gfortran, and there were a couple of apparently trivial complaints about xindy and free_fonts bundled packages being just placeholders, but it did seem to run ok after a few runs of make / make install [although the latter is said to be a no-op].  Then, having deleted the source directory (as the given PREFIX was outside it) the files under PREFIX *didn't* run.  Environment variables from the compilation were needed?  Or the source/build place and/or the sage script therein were needed?  Or I just imagined it working before?
#  But, when starting afresh, running plain ./configure && make without any PREFIX (defaults to a prefix within the source/build dir) and without any exhortations to ignore system packages or build extras, it worked on RHEL9.  Probably the extra packages not thereby enabled are for extra-obscure stuff, much outside my usual interest. 


# older efforts  

dnf install    autoconf automake binutils boost-devel bzip2 bzip2-devel clang cmake curl diffutils fflas-ffpack-devel findutils gc gcc gcc-c++ gcc-gfortran gc-devel gd gd-devel gengetopt git givaro givaro-devel glpk glpk-devel glpk-utils gmp gmp-devel gnu-free-mono-fonts gnu-free-sans-fonts gnu-free-serif-fonts gnupg2 graphviz gsl gsl-devel ImageMagick iml iml-devel info isl-devel latexmk libatomic_ops libatomic_ops-devel libbraiding-devel libcurl-devel libffi libffi-devel libjpeg-turbo-devel libmpc libmpc-devel libtool libxml2-devel m4 make meson mpfr-devel ncurses-devel ninja-build openblas-devel openssh openssl openssl-devel pandoc patch patchelf perl perl-ExtUtils-Embed perl-ExtUtils-MakeMaker perl-File-Slurp perl-IPC-Cmd perl-JSON perl-TermReadKey perl-Term-ReadLine-Gnu perl-XML-LibXML perl-XML-LibXSLT perl-XML-Writer ppl ppl-devel python3 python3-devel python3-setuptools qhull-devel R R-devel readline-devel sqlite sqlite-devel suitesparse suitesparse-devel tar tbb-devel texinfo tox which xz xz-devel zeromq zeromq-devel zlib-devel

(mkdir and make writable to this user)
 cd /opt/sagemath
 wget https://mirror.dogado.de/sage/src/sage-10.4.tar.gz
 tar -xzf sage-10.4.tar.gz
 cd sage-10.4
 
 ./configure   with all this clobber (below); 
 make -j4 
  and 
 make install -j4 
a few times (still getting errors about xindy and freefonts being only "none" spkgs to request installation of system packages, but somehow causing a problem anyway - seems to have installed and worked anyway to run ../10-4/bin/sage  
then deleted the unpacked source tree, leaving the installation directory (PREFIX) .... now it had errors and wouldn't run...

./configure
--prefix=/opt/sagemath/10-4
--disable-silent-rules
--with-system-4ti2=no
--with-system-gcc=no
--with-system-gmp=no
--with-system-glpk=no
--with-system-zlib=no
--with-system-_develop=no
--with-system-_prereq=no
--with-system-_recommended=no
--with-system-appdirs=no
--with-system-virtualenv=no
--with-system-tox=no
--with-system-bliss=no
--with-system-boost_cropped=no
--with-system-brial=no
--with-system-m4ri=no
--with-system-libpng=no
--with-system-bzip2=no
--with-system-cachetools=no
--with-system-cbc=no
--with-system-openblas=no
--with-system-gfortran=yes
--with-system-texlive_luatex=yes
--with-system-xindy=yes
--with-system-cddlib=no
--with-system-chardet=no
--with-system-cliquer=no
--with-system-cmake=no
--with-system-colorama=no
--with-system-coxeter3=no
--with-system-curl=no
--with-system-distlib=no
--with-system-ecl=no
--with-system-gc=no
--with-system-libatomic_ops=no
--with-system-eclib=no
--with-system-ntl=no
--with-system-pari=no
--with-system-readline=no
--with-system-ncurses=no
--with-system-flint=no
--with-system-mpfr=no
--with-system-ecm=no
--with-system-fflas_ffpack=no
--with-system-givaro=no
--with-system-ffmpeg=no
--with-system-filelock=no
--with-system-fplll=no
--with-system-fricas=no
--with-system-gap=no
--with-system-gengetopt=no
--with-system-gf2x=no
--with-system-gfan=no
--with-system-giac=no
--with-system-git=no
--with-system-gp2c=no
--with-system-graphviz=no
--with-system-gsl=no
--with-system-iconv=no
--with-system-igraph=no
--with-system-imagemagick=no
--with-system-iml=no
--with-system-info=no
--with-system-isl=no
--with-system-lcalc=no
--with-system-libbraiding=no
--with-system-libffi=no
--with-system-libgd=no
--with-system-libgraphviz=no
--with-system-libhomfly=no
--with-system-libjpeg=no
--with-system-liblzma=no
--with-system-xz=no
--with-system-libnauty=no
--with-system-nauty=no
--with-system-libsemigroups=no
--with-system-libxml2=no
--with-system-linbox=no
--with-system-m4rie=no
--with-system-llvm=no
--with-system-lrcalc=no
--with-system-lrslib=no
--with-system-mathjax=no
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--with-system-jupyter_sphinx=no
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--with-system-jupyterlab_mathjax2=no
--with-system-jupyterlab_pygments=no
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--with-system-jupyterlab_widgets=no
--with-system-kiwisolver=no
--with-system-lrcalc_python=no
--with-system-markupsafe=no
--with-system-mathics=no
--with-system-mathics_scanner=no
--with-system-matplotlib=no
--with-system-matplotlib_inline=no
--with-system-memory_allocator=no
--with-system-meson_python=no
--with-system-mistune=no
--with-system-mpmath=no
--with-system-nbclient=no
--with-system-nbconvert=no
--with-system-nbformat=no
--with-system-nest_asyncio=no
--with-system-networkx=no
--with-system-nibabel=no
--with-system-notebook=no
--with-system-notebook_shim=no
--with-system-notedown=no
--with-system-ore_algebra=no
--with-system-osqp_python=no
--with-system-overrides=no
--with-system-p_group_cohomology=no
--with-system-packaging=no
--with-system-palettable=no
--with-system-pandoc_attributes=no
--with-system-pandocfilters=no
--with-system-pari_jupyter=no
--with-system-parso=no
--with-system-pathspec=no
--with-system-pexpect=no
--with-system-phitigra=no
--with-system-pickleshare=no
--with-system-pillow=no
--with-system-pint=no
--with-system-pip=no
--with-system-pkgconfig=no
--with-system-platformdirs=no
--with-system-pluggy=no
--with-system-ply=no
--with-system-pplpy=no
--with-system-primecountpy=no
--with-system-prometheus_client=no
--with-system-prompt_toolkit=no
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--with-system-ptyprocess=no
--with-system-pure_eval=no
--with-system-py=no
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--with-system-pynormaliz=no
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--with-system-pyproject_metadata=no
--with-system-pyrsistent=no
--with-system-pyscipopt=no
--with-system-pysingular=no
--with-system-pytest=no
--with-system-pytest_mock=no
--with-system-pytest_xdist=no
--with-system-python_build=no
--with-system-python_igraph=no
--with-system-python_json_logger=no
--with-system-pythran=no
--with-system-pytz=no
--with-system-pytz_deprecation_shim=no
--with-system-pyx=no
--with-system-pyyaml=no
--with-system-pyzmq=no
--with-system-qdldl_python=no
--with-system-referencing=no
--with-system-requests=no
--with-system-rfc3339_validator=no
--with-system-rfc3986_validator=no
--with-system-rpy2=no
--with-system-rst2ipynb=no
--with-system-sagelib=no
--with-system-sagenb_export=no
--with-system-sagetex=no
--with-system-scipy=no
--with-system-scs=no
--with-system-send2trash=no
--with-system-setuptools=no
--with-system-setuptools_scm=no
--with-system-singular_jupyter=no
--with-system-six=no
--with-system-slabbe=no
--with-system-snappy=no
--with-system-sniffio=no
--with-system-snowballstemmer=no
--with-system-soupsieve=no
--with-system-sphinx=no
--with-system-sphinx_basic_ng=no
--with-system-sphinx_copybutton=no
--with-system-sphinx_inline_tabs=no
--with-system-sphinxcontrib_applehelp=no
--with-system-sphinxcontrib_devhelp=no
--with-system-sphinxcontrib_htmlhelp=no
--with-system-sphinxcontrib_jsmath=no
--with-system-sphinxcontrib_qthelp=no
--with-system-sphinxcontrib_serializinghtml=no
--with-system-sphinxcontrib_websupport=no
--with-system-sqlalchemy=no
--with-system-stack_data=no
--with-system-surface_dynamics=no
--with-system-symengine_py=no
--with-system-sympy=no
--with-system-terminado=no
--with-system-texttable=no
--with-system-tinycss2=no
--with-system-tomli=no
--with-system-tornado=no
--with-system-traitlets=no
--with-system-trove_classifiers=no
--with-system-types_python_dateutil=no
--with-system-typing_extensions=no
--with-system-tzlocal=no
--with-system-uri_template=no
--with-system-urllib3=no
--with-system-wcwidth=no
--with-system-webcolors=no
--with-system-webencodings=no
--with-system-websocket_client=no
--with-system-wheel=no
--with-system-widgetsnbextension=no
--with-system-zipp=no
--enable-4ti2
--enable-benzene
--enable-bliss
--enable-buckygen
--enable-cbc
--enable-ccache
--enable-coxeter3
--enable-csdp
--enable-cunningham_tables
--enable-cvxpy
--enable-cylp
--enable-d3js
--enable-database_cremona_ellcurve
--enable-database_cubic_hecke
--enable-database_jones_numfield
--enable-database_knotinfo
--enable-database_kohel
--enable-database_mutation_class
--enable-database_odlyzko_zeta
--enable-database_stein_watkins
--enable-database_stein_watkins_mini
--enable-database_symbolic_data
--enable-dot2tex
--enable-dsdp
--enable-e_antic
--enable-ecos_python
--enable-fricas
--enable-frobby
--enable-gap_jupyter
--enable-gap_packages
--enable-glucose
--enable-gp2c
--enable-igraph
--enable-isl
--enable-jupymake
--enable-kenzo
--enable-kissat
--enable-latte_int
--enable-libnauty
--enable-libogg
--enable-libsemigroups
--enable-lidia
--enable-lrslib
--enable-mathics
--enable-mathics_scanner
--enable-matroid_database
--enable-mcqd
--enable-meataxe
--enable-modular_resolution
--enable-mpfrcx
--enable-msolve
--enable-normaliz
--enable-notedown
--enable-onetbb
--enable-osqp_python
--enable-p_group_cohomology
--enable-palettable
--enable-pandoc_attributes
--enable-papilo
--enable-pari_elldata
--enable-pari_galpol
--enable-pari_jupyter
--enable-pari_nftables
--enable-pari_seadata
--enable-perl_term_readline_gnu
--enable-pint
--enable-plantri
--enable-polymake
--enable-polytopes_db_4d
--enable-pycosat
--enable-pynormaliz
--enable-pyscipopt
--enable-pysingular
--enable-python_flint
--enable-python_igraph
--enable-qdldl_python
--enable-qepcad
--enable-rst2ipynb
--enable-rubiks
--enable-saclib
--enable-sage_numerical_backends_coin
--enable-sage_numerical_backends_cplex
--enable-sage_numerical_backends_gurobi
--enable-sage_sws2rst
--enable-sagemath_bliss
--enable-sagemath_categories
--enable-sagemath_coxeter3
--enable-sagemath_doc_pdf
--enable-sagemath_environment
--enable-sagemath_mcqd
--enable-sagemath_meataxe
--enable-sagemath_objects
--enable-sagemath_repl
--enable-sagemath_sirocco
--enable-sagemath_tdlib
--enable-scip
--enable-scip_sdp
--enable-scs
--enable-singular_jupyter
--enable-sirocco
--enable-soplex
--enable-symengine
--enable-symengine_py
--enable-tdlib
--enable-texlive
--enable-texttable
--enable-tides
--enable-topcom